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xuzhougeng

xuzhougeng

wisp-science

Open-source, local-first desktop AI research workbench for scientific computing with Python/R, MCP bioinformatics tools, SSH/WSL/GPU runtimes, and OpenAI/Anthropic models.

MCPSkillAgent模型 / 推理工作流 / 自动化agent-skillsai-agentai-assistantai-for-scienceai4sciencebioinformatics
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README

项目介绍

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Wisp Science logo # Wisp Science **The open-source, local-first AI research workbench.** WISP — *Workspace for Intelligent Scientific Practice* Release Downloads DOI License Stars
Windows supported macOS supported Linux supported [English](README.md) · [简体中文](README_zh.md) · [Website](https://xuzhougeng.github.io/wisp-science/) · [Releases](https://github.com/xuzhougeng/wisp-science/releases) Wisp Science desktop app running a bundled RNA-seq analysis demo

Search the literature, run Python and R, query ~80 scientific databases, and keep the trail — figures, runs, decisions, and drafts — in one project. Your data, conversations, and credentials stay on your machines.

Bring your own model. Keep your science.

What you can do

An agent that does the work

Bring OpenAI-compatible or Anthropic models, or drive Codex / Claude Code over ACP. The agent reads and writes project files, runs shell, and loads reusable Skills (SKILL.md) without flooding the prompt. Approval gates stay on unless you opt into Full Permission.

Compute from laptop to remote servers

Persistent Python and R kernels keep variables across cells, conversations, and restarts. Register local, WSL, and SSH hosts once; probe hardware; submit long Runs with live logs. Keys live in the OS keyring, never in SQLite.

Built for science

PubMed, GEO, and ~80 other databases through bundled MCP servers. Offline previews for notebooks, PDFs, Office files, and images. Isolated explorations to try a direction without touching the mainline. A Publication Workspace that freezes manuscript revisions into verifiable Evidence Capsules.

A workbench that remembers

Restart and the full history is back. Undo a turn's file edits. Attach artifacts, files, and runtimes with @; search saved sessions with #; apply a skill with /. Encrypted manual sync and project transfer — nothing syncs in the background.

Get started

  1. Download from GitHub Releases.
  2. Open a bundled demo — no API key needed — to see a full RNA-seq trajectory.
  3. Add a model in Settings → Models and start a project.
Platform Package
Windows Signed MSI / NSIS
macOS Signed, notarized .dmg (Apple Silicon + Intel)
Linux .deb / AppImage (x86_64 + aarch64)

Setup walkthrough: basic configuration · model profiles · ACP agents

Build from source, CLI, and architecture: development.

Documentation

Start Basic setup · Models · ACP agents
Research Explorations · Evidence capsules · Case studies
Projects Transfer · Sync · Global library
Compute Terminals · Remote files · Transfers
Extend Skills · Plugins · Delegation · Channels · Browser
Develop Development · Headless eval

Community

Thanks to everyone who filed issues, sent PRs, and used Wisp on real projects.

@Yu-Qiao-sjtu @lfz0924 @jarxunlai @OrigamiSheep @LeeJyee @stardustFFF @Doctorluka @Charlesyu153 @xiaowen621 @liaoyuan919 @mayunyu925 @lhx-JIPS @chenzhiyu48 @liuyc414 @kevinzzzhang76-dot @Shawn-Gua @Hayesss @hufanglq @Az-Fan @19951219asd @yeshubiao2017-source @xuxh95 @xiaoshen19930901 @scsksprings @lpc520 @lijianchunChina @kjiojio @Kururu1799 @dmh-git-cop @ZZRSCAR @Toomi0124 @Lezhao0226 @HSsnano @zhuifeng1991 @zwbao @yuzhenpeng @youxiudongdong-lang @ying-ge @yemiaoyong @yejia1988 @xingzhuo123 @xiaochuheying19901216 @xiahouzuoying @likemoonriver @lijianguoa @k1600639239 @gongmeiyuan @chhhhai @chenchen199401-cmyk @chenhd3 @btzheng @Winteric123 @ShixiangWang @ScholarlyLuck @Junweichengang @JarningGau @Cloudy-Zhuang @245429488zc-svg @entpyf @jymtop @MenghanLi-lab @knifer510 @pilaobanmust-sketch @JohnnyChen1113 @chewice @XuuChen @fei0810 @Zac-lzh @mugpeng @ChrisLou-bioinfo @georgeatparallel @liufahui005 @portos-wang

Windows code signing by SignPath.io, certificate by the SignPath Foundation. Third-party notices live in development.

License

AGPL-3.0-only, except where a directory notes otherwise. Earlier releases keep the license published with them.

Citation

DOI

@software{xu2026wisp,
  author    = {Xu, Zhou-Geng},
  title     = {Wisp Science: a local-first AI research workbench},
  version   = {v1.2.0},
  year      = {2026},
  publisher = {Zenodo},
  doi       = {10.5281/zenodo.21869520},
  url       = {https://doi.org/10.5281/zenodo.21869520}
}